miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|21152342|gb|BJ473839.1|BJ473839 TTTCTGTTATTGCCTAGTACTCGGTATGTNTAACAGAAATTATTGTTATTTTCAAGAAAAAGTTGATTCAACGGACCCTT
TGCAGCAAAATACTACTCCCTCCGTCCCAAAATAAGTGTCTCAAGCTTAGTACAACTTTGCACTAGAGCTAGTACAAAGT
TGAGACACTTATTTTAAGACGGAGAGAGTACAACACATCATTGTGTATGCAGTGGCCTTGGCAAATTTGCCATCGTATCC
GGATTCTCTACATGTTTAGAGCCATCCATTCCATCTCCACCGTCACCTCCCCCGACTCGGTGTGCTGCAGCTTCAGGGAA
ACCTCCTGCTTCACCTTGCCTCCGGTCACCATGACAGCGCTGTCGGCGGTTAGAGCGTTGTCACCGGACTTGAGCCACCG
GCCGATCTGTATGTCACCGAGCAGCTCTGGATCTCCAAACGATGCTGCCGCATTGATCATGGGCTGCAGGTCGATCTCGG
CCTCCCCCATCAGGTCGTCTTTGGAAACCATATCATGGTCCAACACTTGCAGCTTCAGAGGCCCGTACTTCTGAGGAACA
GAGAGCTTGAGTTCTTCATTCCAGACGGGGTTCAGGTTTCCTTTGATCACTGAAGTCTGTGCTTTCTGTTGTCCGA




Most similar to sp|Q9FVJ3|AGD12_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating
           protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1
          Length = 337

 Score =  180 bits (457), Expect = 6e-45
 Identities = 83/126 (65%), Positives = 103/126 (81%)
 Frame = -3

Query: 634 GQQKAQTSVIKGNLNPVWNEELKLSVPQKYGPLKLQVLDHDMVSKDDLMGEAEIDLQPMI 455
           GQQKAQ++V+K NLNPVWNEEL LSVP  YG +KLQV D+D  S DD+MGEAEID+QP+I
Sbjct: 210 GQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLI 269

Query: 454 NAAASFGDPELLGDIQIGRWLKSGDNALTADSAVMVTGGKVKQEVSLKLQHTESGEVTVE 275
            +A +FGDPE+ GD+QIG+WLKS DNAL  DS + +  GKVKQEV +KLQ+ ESGE+ +E
Sbjct: 270 TSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELE 329

Query: 274 MEWMAL 257
           MEW+ L
Sbjct: 330 MEWLPL 335